PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_9.289
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family FAR1
Protein Properties Length: 248aa    MW: 28511.7 Da    PI: 6.6358
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_9.289genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1896.6e-2874165191
                         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                                  +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+e++ k ++k +++r+ tr gC+a+l++  +  gkw+++ +
  evm.model.supercontig_9.289  74 EFYEMYGRQMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKHAKrENKVSSPRPATREGCNAMLRIAAKGGGKWVIYGF 155
                                  6*****************************************9998845666779*************************** PP

                         FAR1  82 eleHnHelap 91 
                                  ++eHnHel+p
  evm.model.supercontig_9.289 156 VKEHNHELNP 165
                                  *******975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-2574165IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MASTSGQEFS SNRNYRQWLA ETFDGHETPG DDLSDNLDGN DNVTRPSSQR FSVISESPEP  60
IIGMEFESAE EAREFYEMYG RQMGFTIRNN RTRRSLKDNS IIGREFVCSK EGFRAEKHAK  120
RENKVSSPRP ATREGCNAML RIAAKGGGKW VIYGFVKEHN HELNPSKIPP RRSHRIAFCE  180
DEKDLKIREL STELHRERKK SAAYQEQLQM VLKYIEEHSQ QLSLKVEKMN NIVKELESED  240
QESSCSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886953.11e-142PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_015886952.11e-142PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_015886951.11e-142PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A061EIL11e-140A0A061EIL1_THECC; Far-red impaired responsive family protein
STRINGPOPTR_0007s01930.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1808689
Representative plantOGRP8956514
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.13e-50FAR1 family protein